Publications

Statistics of correlated percolation in a bacterial community
Zhai X, Larkin JW, Kikuchi K, Redford SE, Roy U, Süel GM, Mugler A.
PLoS Computational Biology (December 2019)

Signal percolation within a bacterial community
Larkin JW, Zhai X, Kikuchi K, Redford SE, Prindle A, Liu J, Greenfield S, Walczak AM, Garcia-Ojalvo J, Mugler A, Süel GM
Cell Systems (August 2018) *Featured in the journal cover

Inferring causal molecular networks: empirical assessment through a community-based effort
Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang A, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ, The HPN-DREAM Consortium (including Kikuchi K), Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S
Nature Methods (February 2016)

Identification of drug-target modules in the human protein-protein interaction network
Hase T, Kikuchi K, Ghosh S, Kitano H, Tanaka H
Artificial Life and Robotics (November 2014)

Talks

A network guided approach towards identification of novel drug targets in MRSA
Kikuchi K, Hase T, Ghosh S, Kitano H
8th Asian Young Researchers Conference on Computational and Omics Biology (January 2015)

Role of DNA repair in Thermus thermophilus genomic integrity: Analyzing through a Homologous Recombination Detection System
Kikuchi K, Ezaki K, Mera H, Hiratsu K, Nunoshiba T
42nd Annual Meeting of the Japanese Environmental Mutagen Society (November 2013)

Evaluation of a Homologous Recombination Detection System in Thermus thermophilus
Kikuchi K, Ezaki K, Mera H, Hiratsu K, Nunoshiba T
26th Summer School of Mutagenesis Mechanisms (June 2013)